Author - Stella Eggels
Total Templates: 40
Total Downloads: 5289
| Name | Description | Version | Downloads | Id |
|---|---|---|---|---|
| ArrayExpress - Plant sample | Template with the mandatory sample information for submitting functional genomic data on a plant sample to ArrayExpress. | 1.0.6 | 25 | a2670eec-163d-4fc3-bfe5-7c17b77ce9a6 |
| ArrayExpress - Sequencing library | Template with the mandatory sequencing library information for submitting functional genomic data to ArrayExpress. | 1.0.7 | 1 | 4f800135-d67c-4277-8333-185c6de712f9 |
| Gas exchange measurement | Assay template to describe gas exchange (CO2 assimilation, transpiration etc.) measurements of plant leaves. | 1.0.2 | 145 | c264fcb2-706b-41ef-813b-b409f8757aa1 |
| Imaging assay | Template that describes the measurement working steps for imaging-related research. Template is based on REMBI (recommended metadata for biological images). | 2.0.0 | 145 | e60ba840-a310-4ea9-8a1e-5f4c979473f3 |
| Imaging computation | Template that describes the computational working steps for imaging-related research. Template is based on REMBI (recommended metadata for biological images). | 2.0.0 | 145 | 0708cd5a-f3b4-400c-a188-9c6ac477906c |
| Imaging sample | Template that describes the sample used for imaging. Template is adapted from REMBI (recommended metadata for biological images). | 2.0.0 | 145 | 8fbc694a-5adf-4f97-8cd8-3bcedc37c98d |
| MIMS - Metagenomics | Template that includes the minimum required information to describe a metagenomics experiment, based on the Mimimum Information about a Metagenome Sequence (MIMS) standard. This template should be combined with the MIxS - Sample information template to contain all required information. | 1.0.2 | 145 | b0d579bd-8045-4b1c-b836-5c46ec19af2b |
| Plant growth conditions | Template to describe a plant growth conditions. | 1.0.1 | 145 | f12e98ee-a4e7-4ada-ba56-1e13cce1a44b |
| Plant sampling | Template to describe sample collection from plants. | 1.0.1 | 145 | 2c588520-2675-444b-87dc-82f3fca431f9 |
| PRIDE | A template for the metadata required for PRIDE (Proteomics Identifications Database) submission. | 1.0.4 | 143 | b98e2f29-3984-4812-ba14-c1c40f8703e5 |
| CIMR - Chromatography | Template for chromatography assays based on the Core Information For Metabolomics Reporting (CIMR). | 1.0.0 | 145 | b250a40f-1aa9-45a5-b759-672802c1aaa6 |
| CIMR - Mass spectrometry | Template for mass spectrometry assays based on the Core Information For Metabolomics Reporting (CIMR). | 1.0.0 | 145 | 2aa992c6-93d8-436e-a974-93ce73280505 |
| CIMR - Sample preparation | Template to describe sampling and extraction for a metabolomics sample based on the Core Information for Metabolomics Reporting. | 1.0.0 | 145 | 1e0cd74f-e1cb-418d-af58-7240aa8ccefe |
| ENA - Gene promoter annotated sequence | Template for submission of uni- or bidirectional gene promoter regions to ENA (European Nucleotide Archive). | 1.0.3 | 145 | 8b8964c3-d7fd-4b6f-a33d-5b40a413ed9b |
| ENA - Genome assembly | Template with the mandatory information for submitting a genome assembly to ENA (European nucleotide archive). | 1.0.0 | 145 | f064f32b-d0c5-45bb-b237-07e5944a1663 |
| ENA - Plant sample | Template for the ENA (European Nucleotide Archive) checklist for submission of plant sample information associated with molecular data (ERC000037). | 1.0.4 | 143 | 046a7143-98f9-41c3-8815-d1b6597b964f |
| ENA - Plant sample - extension | Extension template for the ENA (European Nucleotide Archive) checklist for submission of plant sample information associated with molecular data (ERC000037). This template comprises only the "recommended" terms. | 1.0.3 | 145 | 374bd596-e04e-4fad-bc02-466a57f09d3f |
| ENA - Raw sequencing reads | Template for submission of sequencing reads to ENA (European Nucleotide Archive). The template can be used for CRAM, BAM, Fastq, HDF5 and FAST5 files. | 1.0.5 | 145 | e1a8a31c-521b-4302-ad78-954c1acc6588 |
| ENA - Single CDS annotated sequence | Template for submission of complete or partial coding sequence (CDS) derived from genomics DNA or from mRNA (via cDNA) to ENA (European Nucleotide Archive). | 1.0.3 | 145 | aee468d3-cc59-46ee-a4e6-d0c4f6461282 |
| GEO - High-throughput sequencing - Assay | Template to describe the RNA high-throughput sequencing assay, i.e. the actual measurement, with the minimal information required by GEO (Gene Expression Omnibus). | 1.0.5 | 35 | d5be4b6a-c720-404e-9e14-21ba698e2a37 |
| GEO - High-throughput sequencing - Computational analysis | Template to describe the computational analysis of RNA-Seq data with the minimal information required by GEO (Gene Expression Omnibus). | 1.0.2 | 145 | 7475522c-e019-4641-93fe-7d5cb1731080 |
| GEO - High-throughput sequencing - Sample | Template to describe the minimal information about the sample for submission of high-throughput sequencing data to GEO (Gene Expression Omnibus). | 1.0.3 | 39 | 664a4204-5879-4227-8e73-3624957b58d9 |
| MetaboLights - Chromatography | Template with the extraction and chromatography protocol information for GC- or LC-MS analyses for submission to MetaboLights. | 1.0.4 | 145 | 065e2028-49d6-410d-8847-7c0fec07bb3f |
| MetaboLights - Mass spectrometry | Template with the mass spectrometry protocol information for GC- or LC-MS analyses for submission to MetaboLights. | 1.0.3 | 145 | 0f126e2e-44ea-4b40-8b2d-2d22716023d4 |
| MetaboLights - NMR sample | Template with extraction and NMR sample protocol information for submission of NMR analyses to MetaboLights. | 1.0.3 | 145 | 72690ffe-513f-407c-bed3-f0025ab71d5c |
| MetaboLights - NMR spectroscopy | Template with NMR spectroscopy protocol information for submission to MetaboLights. | 1.0.3 | 145 | 07a50660-ec41-499a-8a44-7259c38c46a8 |
| MIAPE - Chromatography | Template to describe proteomic chromatography assays based on the Minimum Information About a Proteomics Experiment standard for Column Chromatography (MIAPE-CC). | 1.0.1 | 143 | 1d02548f-d586-4af7-bcc8-e3aca73586d4 |
| MIAPE - Gel electrophoresis | Template with the metadata about a gel electrophoresis experiment based on the Minimum Information About a Proteomics Experiment standard for Gel Electrophoresis (MIAPE-GE). Descriptors on the detection and image acquisition are not included in this template. | 1.0.0 | 145 | 7c7567e5-7915-4d57-9c13-3150db0aeb29 |
| MIAPE - Mass spectrometer | Template containing the instrument-related metadata from the Minimum Information About a Proteomics Experiment (MIAPE) standard for mass spectrometry (MIAPE-MS). | 1.0.0 | 145 | 27b5ca88-9223-4321-a422-3be57ad510da |
| MIAPE - Mass spectrometry data | Template to describe data acquisition and analysis of mass spectrometry based on the Minimum Information About a Proteomics Experiment (MIAPE) standard for mass spectrometry (MIAPE-MS). | 1.0.0 | 145 | 9047e5ab-3bbe-4966-b26b-ff5d0c5b2015 |
| MIMIx | Template with the Minimal Information about a Molecular Interaction experiment belonging to the MIAPE standards. | 1.0.0 | 145 | d3adc6d9-f80c-4f2b-9588-65d5d64121b5 |
| MIAPPE - Biological material | Template to describe the biological material according to MIAPPE v.1.1. | 1.0.3 | 145 | 0695f30b-e3d7-4c6b-b3c2-4ebdccab8670 |
| MIAPPE - Experimental factors | Template that includes all experimental factors from the MIAPPE appendix. | 1.0.3 | 145 | 25a1a248-f9c0-4af4-b6d1-980b2dc8427d |
| MIAPPE - Metadata | Template to describe additional information regarding investigation and study, that are required/optional by MIAPPE but not by ISA. ISA-specific terms are not covered by the template. | 1.0.2 | 145 | c7850e9a-510e-4212-aebf-5126c020ee95 |
| MIAPPE - Observation unit and sample | Template to describe the observation unit (source) and the sample from a MIAPPE experiment, according to MIAPPE v.1.1. | 1.0.3 | 145 | 15c74f32-be49-4154-8421-325580721bbc |
| MIAPPE - Observed variable | Template to describe the observed variable according to MIAPPE v.1.1. | 1.0.0 | 145 | de71561e-7d60-4ab2-8881-4105f97e8703 |
| MIGS - Genome Sequence | This template contains the mandatory information based on the Minimum Information about a Genome Sequence (MIGS) standard for eukaryotes. The template should be combined with the MIxS - Sample information template to contain all required information. | 1.0.0 | 145 | 0eaba7d3-041a-461e-9a58-c5c6635df24d |
| MISAG - Single amplified genome | Template with the mandatory metadata based on the Minimum Information about a Single Amplified Genome (MISAG) standard. This template should be combined with the MIxS - Sample information template to contain all required information. | 1.0.0 | 145 | 4a82415e-a7c0-4b42-a465-5af9504e7f03 |
| MIxS - Sample information | Template with the mandatory information with respect to the sample based on the Minimum Information about any (x) Sequence (MIxS) standard. This information is part of the MIGS, MIMS, MIMAG and MISAG checklist. | 1.0.0 | 145 | 5b8e5e07-45a6-43db-88db-369f047106a8 |
| ArrayExpress - Microarray | Template with the mandatory information about a microarray assay for submitting functional genomic data to ArrayExpress. | 1.0.0 | 120 | 0e8f3aec-afc0-448a-9290-ef5e495bafb5 |